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Sub-tomogram averaging of Tula virus glycoprotein spike
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FXU
Sample GLYCOPROTEIN SPIKE OF TULA HANTAVIRUS
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument GATAN CRYOPLUNGE 3 Cryogen Name ETHANE-PROPANE Sample Vitrification Details LIQUID ETHANE-PROPANE
3D Reconstruction Reconstruction Method TOMOGRAPHY Number of Particles 5449 Reported Resolution (Å) 15.6 Resolution Method Other Details SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-3364. (DEPOSITION ID: 14310). Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (5FXU) Refinement Space REAL Refinement Protocol OTHER Refinement Target Cross-correlation coefficient Overall B Value Fitting Procedure Details METHOD--LOCAL CORRELATION REFINEMENT PROTOCOL--X-RAY
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment 2014-08-14 Temperature (Kelvin) 100 Microscope Model FEI POLARA 300 Minimum Defocus (nm) 2000 Maximum Defocus (nm) 3800 Minimum Tilt Angle (degrees) -45 Maximum Tilt Angle (degrees) 45 Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 160000 Calibrated Magnification 37037 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL FITTING UCSF Chimera RECONSTRUCTION Dynamo RECONSTRUCTION IMOD MODEL FITTING UCSF Chimera
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details EACH TILTED IMAGE