5FWN

Imine Reductase from Amycolatopsis orientalis. Closed form in in complex with (R)- Methyltetrahydroisoquinoline


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
180.25 M LI2SO4, 0.1 M BISTRIS PH 6.5, 23% W/V PEG 3350, 1 MM NADPH AND 1 MM RAC-AMINE.
Crystal Properties
Matthews coefficientSolvent content
2.1342.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.852α = 90
b = 65.671β = 90
c = 147.556γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120PIXELDECTRIS PILATUS 6M2016-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I02DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1473.7899.80.0528.36.4291862
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.142.21000.7147.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 5A9R2.1473.7827700142699.950.174010.171320.22377RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.464
r_dihedral_angle_4_deg18.501
r_dihedral_angle_3_deg14.578
r_long_range_B_refined6.811
r_long_range_B_other6.81
r_dihedral_angle_1_deg6.649
r_scangle_other4.55
r_mcangle_it3.345
r_mcangle_other3.345
r_scbond_it3.148
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.464
r_dihedral_angle_4_deg18.501
r_dihedral_angle_3_deg14.578
r_long_range_B_refined6.811
r_long_range_B_other6.81
r_dihedral_angle_1_deg6.649
r_scangle_other4.55
r_mcangle_it3.345
r_mcangle_other3.345
r_scbond_it3.148
r_scbond_other3.11
r_mcbond_it2.336
r_mcbond_other2.329
r_angle_refined_deg1.825
r_angle_other_deg1.501
r_chiral_restr0.105
r_bond_refined_d0.016
r_gen_planes_refined0.01
r_bond_other_d0.007
r_gen_planes_other0.006
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4071
Nucleic Acid Atoms
Solvent Atoms213
Heterogen Atoms62

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
MOLREPphasing