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Structure of human transthyretin mutant A109V
Crystallization Crystal Properties Matthews coefficient Solvent content 2.2 44.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.952 α = 90 b = 43.925 β = 90 c = 65.125 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 42.48 93.3 0.05 11 3.1 71364 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.2 65.13 67748 3582 92.92 0.16112 0.15981 0.1575 0.18515 0.1797 RANDOM 16.352
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.22 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.564 r_dihedral_angle_4_deg 19.399 r_dihedral_angle_3_deg 14.202 r_scangle_it 7.759 r_dihedral_angle_1_deg 7.249 r_scbond_it 5.438 r_mcangle_it 3.857 r_rigid_bond_restr 2.964 r_mcbond_it 2.49 r_angle_refined_deg 2.425
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.564 r_dihedral_angle_4_deg 19.399 r_dihedral_angle_3_deg 14.202 r_scangle_it 7.759 r_dihedral_angle_1_deg 7.249 r_scbond_it 5.438 r_mcangle_it 3.857 r_rigid_bond_restr 2.964 r_mcbond_it 2.49 r_angle_refined_deg 2.425 r_chiral_restr 0.139 r_bond_refined_d 0.031 r_gen_planes_refined 0.016 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1796 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement