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Structure of RNA-bound decameric HMPV nucleoprotein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other DECAMER OF MONOMERIC HMPV N0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 100 MM TRIS/BICINE, PH 8.5, 90 MM NPS (NAN03, NA2HPO4, (NH4)2SO4), 37.5 % METHYL-2 4-PENTANEDIOL, POLYETHYLENE GLYCOL 1000 AND POLYETHYLENE GLYCOL 3350 (MORPHEUS SCREEN)
Crystal Properties Matthews coefficient Solvent content 2.57 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 202.01 α = 90 b = 233.21 β = 90 c = 203.64 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4.17 101.19 99.9 0.22 9.2 13.5 36125 161.61
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 4.17 4.28 100 1 13.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT DECAMER OF MONOMERIC HMPV N0 4.17 101.19 36102 1798 99.9 0.1932 0.1913 0.2302 0.2485 RANDOM 216.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.9257 -3.5113 -6.4144
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.53 t_omega_torsion 2.21 t_angle_deg 1.12 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.53 t_omega_torsion 2.21 t_angle_deg 1.12 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 27957 Nucleic Acid Atoms 1400 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose BUSTER refinement XDS data reduction Aimless data scaling PHASER phasing