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Pseudomonas aeruginosa RmlA in complex with allosteric inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ASJ PDB ENTRY 4ASJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 4% PEG 6000, 0.1 M MES PH 6, 0.05 M MGCL2, 0.1 M NA BR, 1% BETA-MERCAPTOETHANOL
Crystal Properties Matthews coefficient Solvent content 2.56 52.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.15 α = 90 b = 154.35 β = 92.41 c = 134.8 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MSC SATURN 944 MIRRORS 2015-12-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 27.7 93 0.1 7.1 3.8 102239 2 16.17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 79 0.32 3.3 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ASJ 1.9 134.681 95501 4638 92.988 0.255 0.2534 0.2586 0.2853 0.2869 RANDOM 25.991
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 -0.318 -0.275 -0.248
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.978 r_dihedral_angle_4_deg 16.895 r_dihedral_angle_3_deg 13.621 r_dihedral_angle_1_deg 6.271 r_scangle_it 2.526 r_mcangle_it 2.193 r_scbond_it 1.513 r_angle_refined_deg 1.365 r_mcbond_it 1.311 r_mcbond_other 1.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.978 r_dihedral_angle_4_deg 16.895 r_dihedral_angle_3_deg 13.621 r_dihedral_angle_1_deg 6.271 r_scangle_it 2.526 r_mcangle_it 2.193 r_scbond_it 1.513 r_angle_refined_deg 1.365 r_mcbond_it 1.311 r_mcbond_other 1.311 r_angle_other_deg 0.95 r_nbd_refined 0.198 r_nbd_other 0.182 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.112 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9220 Nucleic Acid Atoms Solvent Atoms 974 Heterogen Atoms 164
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing