X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1A8QPDB ENTRY 1A8Q

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.3146.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.07α = 90
b = 67.2β = 90
c = 140.57γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I03DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.470.398.90.0418.95.61021882
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4489.60.4622.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1A8Q1.470.29100085201398.770.156860.156490.17347RANDOM24.568
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.590.41-0.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.053
r_dihedral_angle_3_deg14.495
r_dihedral_angle_4_deg13.126
r_scbond_it7.484
r_dihedral_angle_1_deg5.236
r_mcangle_it4.658
r_mcbond_it3.612
r_mcbond_other3.589
r_angle_refined_deg1.631
r_angle_other_deg1.394
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.053
r_dihedral_angle_3_deg14.495
r_dihedral_angle_4_deg13.126
r_scbond_it7.484
r_dihedral_angle_1_deg5.236
r_mcangle_it4.658
r_mcbond_it3.612
r_mcbond_other3.589
r_angle_refined_deg1.631
r_angle_other_deg1.394
r_chiral_restr0.094
r_bond_refined_d0.011
r_gen_planes_refined0.008
r_bond_other_d0.007
r_gen_planes_other0.006
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4006
Nucleic Acid Atoms
Solvent Atoms514
Heterogen Atoms128

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
MOLREPphasing