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Cyclophilin A Stabilize HIV-1 Capsid through a Novel Non- canonical Binding Site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3J4F
Sample Helical assembly of HIV-1 capsid protein and host cell factor Cyclophilin A
Specimen Preparation Sample Aggregation State HELICAL ARRAY Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles Reported Resolution (Å) 9 Resolution Method Other Details MOLECULAR DYNAMICS FLEXIBLE FITTING (MDFF) DERIVED MODEL. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-3076. (DEPOSITION ID: 13564). Refinement Type Symmetry Type HELICAL
Map-Model Fitting and Refinement Id 1 (3J4F) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2) 15
Imaging Experiment 1 Date of Experiment 2013-06-20 Temperature (Kelvin) Microscope Model FEI TECNAI F30 Minimum Defocus (nm) 1000 Maximum Defocus (nm) 3500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode OTHER Specimen Holder Model Nominal Magnification 59000 Calibrated Magnification Source OTHER Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL FITTING UCSF Chimera RECONSTRUCTION IHRSR RECONSTRUCTION SPIDER