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CDK8-CYCC IN COMPLEX WITH 8-[3-(3-Amino-1H-indazol-6-yl)-5-chloro- pyridine-4-yl]-2,8-diaza-spiro[4.5]decan-1-one
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 RESERVOIR SOLUTION : pH 6.90
Crystal Properties Matthews coefficient Solvent content 3.26 62.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.943 α = 90 b = 71.928 β = 90 c = 177.926 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS 6M 2012-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00008 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.36 88.96 97.4 0.082 0.1 9.17 2.8 38677 48.365
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.61 99.1 0.483 0.043 2.31 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 2.36 88.96 36455 1208 97.38 0.2214 0.2369 0.2441 RANDOM 34.592
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2 -1.9 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.312 r_dihedral_angle_4_deg 14.52 r_dihedral_angle_3_deg 12.825 r_scangle_it 5.753 r_dihedral_angle_1_deg 5.661 r_scbond_it 4.102 r_mcangle_it 2.678 r_mcbond_it 1.587 r_angle_refined_deg 1.252 r_angle_other_deg 1.038
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.312 r_dihedral_angle_4_deg 14.52 r_dihedral_angle_3_deg 12.825 r_scangle_it 5.753 r_dihedral_angle_1_deg 5.661 r_scbond_it 4.102 r_mcangle_it 2.678 r_mcbond_it 1.587 r_angle_refined_deg 1.252 r_angle_other_deg 1.038 r_mcbond_other 0.403 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4952 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 61
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction