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Crystal structure of PRMT5:MEP50 with Compound 15 and sinefungin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2 M Sodium acetate, 0.1 M Sodium citrate pH 6.1, 10% w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 3.04 59.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.53 α = 90 b = 138.18 β = 90 c = 179.21 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2012-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.37 89.646 99.8 0.057 0.064 0.028 19.4 5 52316 52316
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.37 2.43 99.4 0.814 0.814 0.407 0.9 5 3832
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.37 89.61 49647 2668 99.73 0.2372 0.2342 0.232 0.2933 0.2891 RANDOM 62.098
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 0.24 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.203 r_dihedral_angle_4_deg 20.663 r_dihedral_angle_3_deg 18.186 r_dihedral_angle_1_deg 6.95 r_mcangle_it 5.529 r_mcbond_it 3.436 r_scbond_it 3.349 r_angle_refined_deg 1.412 r_chiral_restr 0.096 r_bond_refined_d 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.203 r_dihedral_angle_4_deg 20.663 r_dihedral_angle_3_deg 18.186 r_dihedral_angle_1_deg 6.95 r_mcangle_it 5.529 r_mcbond_it 3.436 r_scbond_it 3.349 r_angle_refined_deg 1.412 r_chiral_restr 0.096 r_bond_refined_d 0.01 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7421 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 69
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction