☰ Navigation Tabs
Crystal structure of prefusion Hendra virus F protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2B9B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 295 100mM sodium acetate pH 5.0, 1.75M lithium sulfate, 100mM magnesium sulfate, 3.4 % isopropanol
Crystal Properties Matthews coefficient Solvent content 4.26 71.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.61 α = 90 b = 163.5 β = 94.13 c = 147.94 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-08-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.99969 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 49.62 99.63 0.122 8.37 3.99 80411
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.28 99.6 0.666 1.9 4.07
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2B9B 3.2 49.62 80411 4233 99.63 0.2542 0.2527 0.2528 0.2833 0.2834 RANDOM 95.232
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.43 2.35 2.39 -5.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.769 r_dihedral_angle_3_deg 20.092 r_dihedral_angle_4_deg 15.765 r_dihedral_angle_1_deg 6.757 r_mcangle_it 5.097 r_scbond_it 4.091 r_mcbond_it 3.028 r_angle_refined_deg 1.541 r_chiral_restr 0.099 r_bond_refined_d 0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.769 r_dihedral_angle_3_deg 20.092 r_dihedral_angle_4_deg 15.765 r_dihedral_angle_1_deg 6.757 r_mcangle_it 5.097 r_scbond_it 4.091 r_mcbond_it 3.028 r_angle_refined_deg 1.541 r_chiral_restr 0.099 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20133 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 282
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data scaling MOLREP phasing XDS data reduction