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Crystal structure of recombinant MtaL at 1.35 Angstrom resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Y9W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M bis-tris buffer and 2 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.9 57.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.975 α = 90 b = 61.337 β = 108.36 c = 59.055 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 47.01 99.2 0.038 2.7 3.7 41973
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.42 98.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2Y9W 1.35 47.01 39852 2121 99.06 0.16324 0.16214 0.1669 0.18315 0.1883 RANDOM 22.869
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.02 0.97 -1.23 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.186 r_dihedral_angle_3_deg 11.925 r_dihedral_angle_4_deg 10.136 r_dihedral_angle_1_deg 7.027 r_long_range_B_refined 6.995 r_long_range_B_other 6.568 r_scangle_other 5.107 r_scbond_it 3.391 r_scbond_other 3.391 r_mcangle_other 2.952
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.186 r_dihedral_angle_3_deg 11.925 r_dihedral_angle_4_deg 10.136 r_dihedral_angle_1_deg 7.027 r_long_range_B_refined 6.995 r_long_range_B_other 6.568 r_scangle_other 5.107 r_scbond_it 3.391 r_scbond_other 3.391 r_mcangle_other 2.952 r_mcangle_it 2.946 r_angle_refined_deg 2.432 r_mcbond_it 2.045 r_mcbond_other 2.006 r_angle_other_deg 1.152 r_chiral_restr 0.147 r_bond_refined_d 0.027 r_gen_planes_refined 0.013 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1198 Nucleic Acid Atoms Solvent Atoms 219 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SCALA data scaling PHASER phasing