☰ Navigation Tabs
Crystal structure of the S-methyltransferase TmtA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M potassium acetate, 2.2 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.08 40.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.1 α = 90 b = 109.21 β = 112.44 c = 59.94 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 45 95.9 0.05 14 3.1 89458
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.6 94.8 0.53
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 15 84984 4473 96.07 0.13397 0.1324 0.1317 0.16393 0.165 RANDOM 17.689
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 -0.18 -0.56 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.754 r_sphericity_free 26.718 r_dihedral_angle_4_deg 16.808 r_dihedral_angle_3_deg 13.281 r_sphericity_bonded 7.003 r_dihedral_angle_1_deg 5.856 r_long_range_B_refined 3.119 r_long_range_B_other 3.119 r_scangle_other 2.154 r_rigid_bond_restr 1.886
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.754 r_sphericity_free 26.718 r_dihedral_angle_4_deg 16.808 r_dihedral_angle_3_deg 13.281 r_sphericity_bonded 7.003 r_dihedral_angle_1_deg 5.856 r_long_range_B_refined 3.119 r_long_range_B_other 3.119 r_scangle_other 2.154 r_rigid_bond_restr 1.886 r_scbond_it 1.853 r_scbond_other 1.853 r_mcangle_it 1.572 r_mcangle_other 1.572 r_angle_refined_deg 1.349 r_mcbond_it 1.242 r_mcbond_other 1.234 r_angle_other_deg 0.913 r_chiral_restr 0.085 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4449 Nucleic Acid Atoms Solvent Atoms 520 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHARP phasing