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Spirochaeta thermophila X module - CBM64 - wildtype
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5E9O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.4 293 1.5 M Sodium malonate
Crystal Properties Matthews coefficient Solvent content 2.86 56.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.517 α = 90 b = 58.517 β = 90 c = 33.437 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 97.9 0.039 0.042 28.7 7.3 34847 -3 15.377
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.3 92.5 0.345 0.375 5.37 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5e9o 1.2 30 33108 1739 97.85 0.1066 0.1056 0.1249 0.1358 RANDOM 14.336
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.11 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 38.088 r_sphericity_free 33.83 r_dihedral_angle_2_deg 32.366 r_sphericity_bonded 16.004 r_dihedral_angle_3_deg 10.727 r_dihedral_angle_1_deg 7.107 r_rigid_bond_restr 6.573 r_mcangle_it 2.582 r_angle_refined_deg 2.13 r_mcbond_it 1.971
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 38.088 r_sphericity_free 33.83 r_dihedral_angle_2_deg 32.366 r_sphericity_bonded 16.004 r_dihedral_angle_3_deg 10.727 r_dihedral_angle_1_deg 7.107 r_rigid_bond_restr 6.573 r_mcangle_it 2.582 r_angle_refined_deg 2.13 r_mcbond_it 1.971 r_mcbond_other 1.935 r_angle_other_deg 1.098 r_chiral_restr 0.132 r_bond_refined_d 0.025 r_gen_planes_refined 0.014 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 715 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 14
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing