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Crystal Structure of Trypanosoma cruzi Dihydroorotate Dehydrogenase in Complex with Neq0071
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.2 277 100 mM CACODILATE pH 5.2, 13% PEG3350, 50 mM HEXAMMINECOBALT (III) CHLORIDE, 5 mM OXONATE
Crystal Properties Matthews coefficient Solvent content 2.24 45.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.325 α = 90 b = 71.789 β = 90 c = 124.343 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2012-12-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 50 98.5 0.083 8.4 7 116831
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.41 1.43 96.6 0.394 6.8 5671
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.41 50 110086 5946 97.88 0.1458 0.1446 0.1454 0.1675 0.1686 RANDOM 17.433
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 -0.2 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.577 r_dihedral_angle_4_deg 20.797 r_dihedral_angle_3_deg 12.784 r_dihedral_angle_1_deg 6.708 r_angle_refined_deg 2.854 r_mcangle_it 2.423 r_mcbond_it 1.797 r_mcbond_other 1.734 r_angle_other_deg 1.307 r_chiral_restr 0.152
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.577 r_dihedral_angle_4_deg 20.797 r_dihedral_angle_3_deg 12.784 r_dihedral_angle_1_deg 6.708 r_angle_refined_deg 2.854 r_mcangle_it 2.423 r_mcbond_it 1.797 r_mcbond_other 1.734 r_angle_other_deg 1.307 r_chiral_restr 0.152 r_bond_refined_d 0.028 r_gen_planes_refined 0.019 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4776 Nucleic Acid Atoms Solvent Atoms 655 Heterogen Atoms 315
Software Software Software Name Purpose HKL-2000 data collection HKL-2000 data scaling MOLREP model building REFMAC refinement PDB_EXTRACT data extraction