X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62893.7 M sodium formate, pH 6.0, 8 % glycerol
Crystal Properties
Matthews coefficientSolvent content
2.4549.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 145.584α = 90
b = 145.584β = 90
c = 84.002γ = 120
Symmetry
Space GroupP 6 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300HS2015-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2509716.255.926399

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.25025084131596.910.203060.200120.25752RANDOM36.593
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.08-1.04-2.086.74
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.426
r_dihedral_angle_4_deg21.481
r_dihedral_angle_3_deg19.336
r_long_range_B_refined7.847
r_long_range_B_other7.812
r_dihedral_angle_1_deg6.655
r_scangle_other5.546
r_mcangle_it4.367
r_mcangle_other4.366
r_scbond_it3.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.426
r_dihedral_angle_4_deg21.481
r_dihedral_angle_3_deg19.336
r_long_range_B_refined7.847
r_long_range_B_other7.812
r_dihedral_angle_1_deg6.655
r_scangle_other5.546
r_mcangle_it4.367
r_mcangle_other4.366
r_scbond_it3.38
r_scbond_other3.379
r_mcbond_it2.71
r_mcbond_other2.706
r_angle_refined_deg1.801
r_angle_other_deg1.075
r_chiral_restr0.103
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3501
Nucleic Acid Atoms
Solvent Atoms97
Heterogen Atoms27

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing