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Holo TrpB from Pyrococcus furiosus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.85 298.15 20% PEG3350, 0.1 M HEPES
Crystal Properties Matthews coefficient Solvent content 2.24 45.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.051 α = 90 b = 111.882 β = 90 c = 160.832 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.9795 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 40 99.6 7.3 4.9 161910
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.72 99.9 0.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.69 39.33 161910 8573 97.05 0.20322 0.20192 0.2095 0.22772 0.2343 RANDOM 31.231
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.18 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.519 r_dihedral_angle_4_deg 17.319 r_dihedral_angle_3_deg 13.18 r_dihedral_angle_1_deg 6.071 r_long_range_B_refined 4.765 r_long_range_B_other 4.696 r_angle_refined_deg 1.15 r_scangle_other 0.793 r_angle_other_deg 0.782 r_mcangle_it 0.729
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.519 r_dihedral_angle_4_deg 17.319 r_dihedral_angle_3_deg 13.18 r_dihedral_angle_1_deg 6.071 r_long_range_B_refined 4.765 r_long_range_B_other 4.696 r_angle_refined_deg 1.15 r_scangle_other 0.793 r_angle_other_deg 0.782 r_mcangle_it 0.729 r_mcangle_other 0.729 r_scbond_it 0.472 r_scbond_other 0.464 r_mcbond_it 0.418 r_mcbond_other 0.418 r_chiral_restr 0.067 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11711 Nucleic Acid Atoms Solvent Atoms 654 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing Coot model building