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Crystal structure, maturation and flocculating properties of a 2S albumin from Moringa oleifera seeds
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.3 293 Initial: 0.1 M sodium acetate pH 4.6 and 2.0 M NaCl, Optimization: 0.1 M sodium acetate pH 4.3 and 2.4 M NaCl
Crystal Properties Matthews coefficient Solvent content 2.16 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.867 α = 90 b = 106.867 β = 90 c = 43.16 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.45 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 40 99.6 16.96 6.7 13674 13674
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.81
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.69 75.57 11992 608 88.57 0.22391 0.22192 0.2366 0.26288 0.2809 RANDOM 35.896
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.32 -0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.857 r_dihedral_angle_4_deg 20.593 r_dihedral_angle_3_deg 15.72 r_long_range_B_refined 8.516 r_long_range_B_other 8.512 r_scangle_other 6.694 r_dihedral_angle_1_deg 6.217 r_mcangle_it 4.971 r_mcangle_other 4.966 r_scbond_it 4.397
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.857 r_dihedral_angle_4_deg 20.593 r_dihedral_angle_3_deg 15.72 r_long_range_B_refined 8.516 r_long_range_B_other 8.512 r_scangle_other 6.694 r_dihedral_angle_1_deg 6.217 r_mcangle_it 4.971 r_mcangle_other 4.966 r_scbond_it 4.397 r_scbond_other 4.392 r_mcbond_it 3.637 r_mcbond_other 3.582 r_angle_refined_deg 2.018 r_angle_other_deg 1.141 r_chiral_restr 0.156 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 740 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling HKL-2000 data collection