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Crystal structure of KAI2-like protein from Striga (apo state 2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 278 Sodium formate, Tris
Crystal Properties Matthews coefficient Solvent content 2.48 50.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76 α = 90 b = 76 β = 90 c = 180 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2014-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 24.88 100 25 20.2 9559
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.65 24.88 9057 485 99.79 0.21017 0.20718 0.2101 0.26557 0.2639 RANDOM 63.767
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.086 r_dihedral_angle_4_deg 14.186 r_dihedral_angle_3_deg 13.715 r_long_range_B_refined 6.127 r_long_range_B_other 6.126 r_dihedral_angle_1_deg 5.411 r_mcangle_it 3.836 r_mcangle_other 3.834 r_scangle_other 2.911 r_mcbond_it 2.137
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.086 r_dihedral_angle_4_deg 14.186 r_dihedral_angle_3_deg 13.715 r_long_range_B_refined 6.127 r_long_range_B_other 6.126 r_dihedral_angle_1_deg 5.411 r_mcangle_it 3.836 r_mcangle_other 3.834 r_scangle_other 2.911 r_mcbond_it 2.137 r_mcbond_other 2.137 r_scbond_it 1.607 r_scbond_other 1.607 r_angle_refined_deg 1.093 r_angle_other_deg 0.898 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2102 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing