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Crystal structure of the RTA-c10-P2 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AAI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 0.4 M ammonium dihydrogen phosphate
Crystal Properties Matthews coefficient Solvent content 2.5 50.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.626 α = 90 b = 67.626 β = 90 c = 140.652 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2014-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 0.9792
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50.01 99.7 26.5 11.9 52756
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2AAI 1.5 50.01 50139 2531 99.63 0.14767 0.14624 0.1489 0.1752 0.1764 RANDOM 25.138
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 0.24 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.099 r_sphericity_free 33.254 r_dihedral_angle_4_deg 17.769 r_dihedral_angle_3_deg 12.878 r_sphericity_bonded 11.878 r_dihedral_angle_1_deg 4.549 r_long_range_B_refined 2.966 r_long_range_B_other 2.573 r_scangle_other 2.395 r_scbond_it 1.967
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.099 r_sphericity_free 33.254 r_dihedral_angle_4_deg 17.769 r_dihedral_angle_3_deg 12.878 r_sphericity_bonded 11.878 r_dihedral_angle_1_deg 4.549 r_long_range_B_refined 2.966 r_long_range_B_other 2.573 r_scangle_other 2.395 r_scbond_it 1.967 r_scbond_other 1.966 r_mcangle_it 1.951 r_mcangle_other 1.951 r_mcbond_it 1.541 r_mcbond_other 1.538 r_rigid_bond_restr 1.305 r_angle_refined_deg 1.24 r_angle_other_deg 0.948 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2071 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALA data scaling MOLREP phasing