Experiment: 5D84

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	8.5	293	0.1 M Tris, pH 8.5, 0.2 M MgCl2, 20-25% PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
2.04	39.69

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 56.08	α = 90
b = 115.828	β = 90
c = 45.138	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RAYONIX MX300HE	Vertical Focusing Mirror: ultra-low expansion (ULE) titanium siliicate flat mirror with Pt, Uncoated, and Pd strips	2010-12-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	CLSI BEAMLINE 08ID-1	0.97952	CLSI	08ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.45	50	97.3	0.055	13	5.9		51631

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.45	1.5	94.7		0.413		5.6	4954

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.45	50	48724	2598	96.82	0.1265	0.1239	0.1753	RANDOM	18.813

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.25			0.59		-0.35

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	42.449
r_dihedral_angle_2_deg	36.923
r_sphericity_bonded	16.278
r_dihedral_angle_4_deg	15.178
r_dihedral_angle_3_deg	12.462
r_dihedral_angle_1_deg	5.436
r_scbond_it	3.354
r_mcangle_it	3.327
r_rigid_bond_restr	3.049
r_mcbond_it	2.627

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	42.449
r_dihedral_angle_2_deg	36.923
r_sphericity_bonded	16.278
r_dihedral_angle_4_deg	15.178
r_dihedral_angle_3_deg	12.462
r_dihedral_angle_1_deg	5.436
r_scbond_it	3.354
r_mcangle_it	3.327
r_rigid_bond_restr	3.049
r_mcbond_it	2.627
r_angle_refined_deg	1.515
r_chiral_restr	0.092
r_bond_refined_d	0.012
r_gen_planes_refined	0.009

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2456
Nucleic Acid Atoms
Solvent Atoms	364
Heterogen Atoms	16

Software

Software
Software Name	Purpose
HKL-2000	data scaling
PHENIX	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.