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Crystal structure of MOR04357, a neutralizing anti-human GM-CSF antibody Fab fragment
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.25 293 26 % PEG3350, 0.2 M NaCl and 0.1 M Tris, pH 8.25, 10.5 mg/mL protein
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.823 α = 90 b = 66.922 β = 90 c = 156.657 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-01-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 78.33 97.8 0.088 14.17 7.9 36714
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 2 96.4 0.618 8.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.88 78.33 34906 1000 97.8 0.21431 0.21315 0.2242 0.25419 0.258 RANDOM 43.282
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.92 0.98 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.92 r_dihedral_angle_4_deg 17.791 r_dihedral_angle_3_deg 12.339 r_dihedral_angle_1_deg 7.084 r_scangle_it 5.295 r_scbond_it 4.257 r_mcangle_it 2.923 r_mcbond_it 2.37 r_angle_refined_deg 1.303 r_angle_other_deg 0.736
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.92 r_dihedral_angle_4_deg 17.791 r_dihedral_angle_3_deg 12.339 r_dihedral_angle_1_deg 7.084 r_scangle_it 5.295 r_scbond_it 4.257 r_mcangle_it 2.923 r_mcbond_it 2.37 r_angle_refined_deg 1.303 r_angle_other_deg 0.736 r_mcbond_other 0.678 r_symmetry_vdw_other 0.189 r_nbd_other 0.188 r_symmetry_hbond_refined 0.188 r_nbd_refined 0.186 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.152 r_symmetry_vdw_refined 0.113 r_nbtor_other 0.086 r_chiral_restr 0.072 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3155 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 12
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement MOLREP phasing