☰ Navigation Tabs
2009 H1N1 PA endonuclease mutant F105S
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5CCY PDB entry 5CCY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 0.2 M magnesium chloride, 2 mM manganese chloride, 0.1 M Tris, pH 8.5, 30% w/v PEG4000
Crystal Properties Matthews coefficient Solvent content 2.29 46.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.683 α = 90 b = 73.683 β = 90 c = 128.053 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2015-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50 99.5 0.076 0.078 0.02 11.6 15.5 11735
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.23 98.7 0.732 0.761 0.206 0.878 13 1131
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 5CCY 2.15 50 11060 638 99.37 0.1886 0.1851 0.1963 0.2514 0.2527 RANDOM 47.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.87 -0.43 -0.87 2.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.163 r_dihedral_angle_4_deg 19.592 r_dihedral_angle_3_deg 15.757 r_dihedral_angle_1_deg 7.018 r_mcangle_it 3.955 r_mcbond_other 2.714 r_mcbond_it 2.713 r_angle_refined_deg 2.303 r_angle_other_deg 1.177 r_chiral_restr 0.131
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.163 r_dihedral_angle_4_deg 19.592 r_dihedral_angle_3_deg 15.757 r_dihedral_angle_1_deg 7.018 r_mcangle_it 3.955 r_mcbond_other 2.714 r_mcbond_it 2.713 r_angle_refined_deg 2.303 r_angle_other_deg 1.177 r_chiral_restr 0.131 r_bond_refined_d 0.025 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1441 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 2
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing