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Kinase domain of cSrc in complex with RL40
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.085-0.125 mM MES, 9-11.5 % PEG20000
Crystal Properties Matthews coefficient Solvent content 3.02 59.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.27 α = 101.56 b = 63.79 β = 89.91 c = 74.97 γ = 89.98
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2010-05-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0039 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 45 94.6 0.19 0.231 9.39 3.09 14548 -3 34.039
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.1 95.8 0.5 0.6 4.24
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3 43.49 13820 728 94.66 0.29417 0.28986 0.2943 0.37648 0.3745 RANDOM 33.119
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.63 1.05 -3.27 -0.4 3.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.448 r_dihedral_angle_3_deg 26.511 r_dihedral_angle_4_deg 23.201 r_dihedral_angle_1_deg 5.515 r_long_range_B_refined 4.654 r_long_range_B_other 4.653 r_mcangle_it 2.796 r_mcangle_other 2.796 r_scangle_other 2.121 r_angle_refined_deg 1.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.448 r_dihedral_angle_3_deg 26.511 r_dihedral_angle_4_deg 23.201 r_dihedral_angle_1_deg 5.515 r_long_range_B_refined 4.654 r_long_range_B_other 4.653 r_mcangle_it 2.796 r_mcangle_other 2.796 r_scangle_other 2.121 r_angle_refined_deg 1.98 r_mcbond_it 1.605 r_mcbond_other 1.602 r_scbond_it 1.197 r_scbond_other 1.196 r_angle_other_deg 1.066 r_chiral_restr 0.103 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.007 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4140 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction