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Disproportionating enzyme 1 from Arabidopsis - maltotriose soak
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1X1N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 1 microliter of 9% PEG2000 MME in 0.1 M HEPES-NaOH, pH 8.0 was added to 1 microliter of protein at a concentration of 10 mg/ml in 20 mM HEPES-NaOH, pH 7.5, 150 mM NaCl
Crystal Properties Matthews coefficient Solvent content 2.59 52.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.41 α = 65.46 b = 73.13 β = 69.48 c = 79.12 γ = 67.09
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2011-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9173 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 63.745 89.5 0.036 0.041 0.02 20.5 4.2 105329 105329 27.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 79.9 0.436 0.436 0.238 1.7 4.3 6956
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1X1N 1.8 63.74 100068 5261 89.47 0.1545 0.1532 0.1634 0.1786 0.187 RANDOM 32.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.42 0.26 0.46 -0.9 -0.27 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.558 r_dihedral_angle_4_deg 17.861 r_dihedral_angle_3_deg 12.663 r_dihedral_angle_1_deg 5.77 r_mcangle_it 1.837 r_angle_refined_deg 1.434 r_mcbond_it 1.228 r_mcbond_other 1.218 r_angle_other_deg 0.993 r_chiral_restr 0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.558 r_dihedral_angle_4_deg 17.861 r_dihedral_angle_3_deg 12.663 r_dihedral_angle_1_deg 5.77 r_mcangle_it 1.837 r_angle_refined_deg 1.434 r_mcbond_it 1.228 r_mcbond_other 1.218 r_angle_other_deg 0.993 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8046 Nucleic Acid Atoms Solvent Atoms 688 Heterogen Atoms 269
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing XDS data reduction