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Structure of human methionine aminopeptidase-2 complexed with spiroepoxytriazole inhibitor (+)-31a
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.4 292 Na Citrate, Tert-butanol
Crystal Properties Matthews coefficient Solvent content 2.74 55.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.62 α = 90 b = 101.18 β = 90 c = 100.28 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87260 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 56 99.5 0.053 16.2 3.58 45986
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.795 99.6 0.758 2 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 55.82 44561 1425 99.49 0.16095 0.16001 0.234 0.18885 0.2523 RANDOM 22.373
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.8 -2.04 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.557 r_dihedral_angle_4_deg 16.853 r_dihedral_angle_3_deg 13.726 r_long_range_B_refined 7.863 r_long_range_B_other 7.703 r_dihedral_angle_1_deg 6.924 r_scangle_other 3.758 r_mcangle_it 2.978 r_mcangle_other 2.977 r_scbond_it 2.608
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.557 r_dihedral_angle_4_deg 16.853 r_dihedral_angle_3_deg 13.726 r_long_range_B_refined 7.863 r_long_range_B_other 7.703 r_dihedral_angle_1_deg 6.924 r_scangle_other 3.758 r_mcangle_it 2.978 r_mcangle_other 2.977 r_scbond_it 2.608 r_scbond_other 2.572 r_angle_refined_deg 2.018 r_mcbond_it 1.997 r_mcbond_other 1.997 r_angle_other_deg 0.918 r_chiral_restr 0.131 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2894 Nucleic Acid Atoms Solvent Atoms 326 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing