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Ran GDP Y39A mutant triclinic crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other human Ran GDP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 35% PEG 1000, 50mM Tris pH 8.5, 20mM MgCl2, 1 mM BeF
Crystal Properties Matthews coefficient Solvent content 2.27 45.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.19 α = 97.66 b = 80.73 β = 90 c = 91.65 γ = 90.01
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2009-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.999989 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 47.579 92.2 0.037 14.42 2.02 156462
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.8 81.5 0.368 2.46 1.73
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT human Ran GDP 1.75 47.579 148637 7824 92.24 0.19877 0.19663 0.1966 0.23913 0.2393 RANDOM 29.118
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.02 0.06 0.13 0.04 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.525 r_dihedral_angle_3_deg 18.28 r_dihedral_angle_4_deg 17.978 r_long_range_B_refined 6.983 r_dihedral_angle_1_deg 6.526 r_mcangle_it 4.081 r_scbond_it 3.718 r_mcbond_it 2.947 r_angle_refined_deg 2.117 r_chiral_restr 0.191
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.525 r_dihedral_angle_3_deg 18.28 r_dihedral_angle_4_deg 17.978 r_long_range_B_refined 6.983 r_dihedral_angle_1_deg 6.526 r_mcangle_it 4.081 r_scbond_it 3.718 r_mcbond_it 2.947 r_angle_refined_deg 2.117 r_chiral_restr 0.191 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12669 Nucleic Acid Atoms Solvent Atoms 425 Heterogen Atoms 246
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing