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Crystallographic structure of human rotavirus K8 VP8* in complex with A-type HBGA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.6 M sodium citrate pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.28 46.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.27 α = 90 b = 83.19 β = 94.03 c = 47.75 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2013-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.954 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 47.64 96 6.3 4.2 69208
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.35 47.63 65704 3479 95.85 0.17142 0.17034 0.178 0.19189 0.194 RANDOM 9.284
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.05 0.09 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.354 r_dihedral_angle_3_deg 11.658 r_dihedral_angle_4_deg 7.562 r_dihedral_angle_1_deg 6.54 r_long_range_B_refined 5.126 r_long_range_B_other 5.121 r_angle_refined_deg 1.4 r_scangle_other 1.131 r_mcangle_it 0.855 r_mcangle_other 0.855
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.354 r_dihedral_angle_3_deg 11.658 r_dihedral_angle_4_deg 7.562 r_dihedral_angle_1_deg 6.54 r_long_range_B_refined 5.126 r_long_range_B_other 5.121 r_angle_refined_deg 1.4 r_scangle_other 1.131 r_mcangle_it 0.855 r_mcangle_other 0.855 r_angle_other_deg 0.777 r_scbond_it 0.725 r_scbond_other 0.725 r_mcbond_it 0.504 r_mcbond_other 0.504 r_chiral_restr 0.085 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2576 Nucleic Acid Atoms Solvent Atoms 610 Heterogen Atoms 122
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing