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CRYSTAL STRUCTURE OF BRAF(V600E) IN COMPLEX WITH LY3009120 COMPND
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UWH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 26% PEG 3350, 50 MM AMMONIUM
CITRATE, 50 MM SODIUM FLORIDE, 2 MG/ML PROTEIN, 5-FOLD MOLAR
EXCESS DP4978; CRYSTAL ID 215552F10, SITTING DROP VAPOR
DIFFUSION, TEMPERATURE 289K
Crystal Properties Matthews coefficient Solvent content 2.59 52.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.88 α = 90 b = 93.88 β = 90 c = 165.55 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.00 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.1 0.127 12.25 6.2 20853 -3 33.92
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.77 99.9 0.591 2.9 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1uwh 2.7 50 20740 1044 98.9 0.196 0.194 0.1951 0.238 0.1979 RANDOM 24.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.57 -1.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.286 r_dihedral_angle_4_deg 20.89 r_dihedral_angle_3_deg 17.372 r_dihedral_angle_1_deg 6.107 r_scangle_it 3.617 r_scbond_it 2.103 r_angle_refined_deg 1.605 r_mcangle_it 1.588 r_mcbond_it 0.833 r_chiral_restr 0.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.286 r_dihedral_angle_4_deg 20.89 r_dihedral_angle_3_deg 17.372 r_dihedral_angle_1_deg 6.107 r_scangle_it 3.617 r_scbond_it 2.103 r_angle_refined_deg 1.605 r_mcangle_it 1.588 r_mcbond_it 0.833 r_chiral_restr 0.109 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3944 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 63
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement Coot model building PHASER phasing