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Crystal structure of ORC2 C-terminal domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4XGC polyalanine coordinates derived from PDB entry 4XGC.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20% PEG-3350, 0.2 M magnesium formate
Crystal Properties Matthews coefficient Solvent content 2.39 48.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.038 α = 90 b = 55.038 β = 90 c = 75.629 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792604 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 47.66 99.8 0.077 0.024 0.999 21.5 11 8700
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.06 98.1 1.03 0.327 0.801 2.2 10.6 632
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT polyalanine coordinates derived from PDB entry 4XGC. 2.01 47.66 8670 837 99.85 0.196 0.1896 0.1962 0.2573 0.2573 RANDOM 39.091
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.11 0.56 1.11 -3.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.764 r_dihedral_angle_3_deg 15.091 r_dihedral_angle_4_deg 14.502 r_dihedral_angle_1_deg 5.055 r_mcangle_it 2.683 r_mcbond_it 1.874 r_mcbond_other 1.822 r_angle_refined_deg 1.499 r_angle_other_deg 0.975 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.764 r_dihedral_angle_3_deg 15.091 r_dihedral_angle_4_deg 14.502 r_dihedral_angle_1_deg 5.055 r_mcangle_it 2.683 r_mcbond_it 1.874 r_mcbond_other 1.822 r_angle_refined_deg 1.499 r_angle_other_deg 0.975 r_chiral_restr 0.092 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 835 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 3
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Coot model building PHENIX refinement ARP model building