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CRYSTAL STRUCTURE OF THE S156E MUTANT OF HUMAN AQUAPORIN 5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3D9S PDB ENTRY 3D9S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.9 281 RESERVOIR SOLUTION (100MM TRIS-HCL
PH7.9, 100MM NACL, 21% PEG400) MIXED WITH EACH OF 1,6-HEXANEDIOL
(30%, V/V) AND 1,3-PROPANEDIOL (40%, V/V) AND MIXED WITH THE
TEMPERATURE 281K
Crystal Properties Matthews coefficient Solvent content 3.87 68.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.75 α = 90 b = 170.75 β = 90 c = 189.671 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8726 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50.81 98.8 0.18 0.156 7 4 94885 2 38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 99.4 0.778 0.671 2.1 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3D9S 2.6 50.8 94885 4754 98.8 0.195 0.193 0.23 0.2159 RANDOM 32.03
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.07 0.53 1.07 -1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.31 r_dihedral_angle_4_deg 13.234 r_dihedral_angle_3_deg 12.972 r_dihedral_angle_1_deg 4.307 r_scangle_it 1.018 r_angle_refined_deg 0.95 r_scbond_it 0.603 r_mcangle_it 0.564 r_mcbond_it 0.313 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.31 r_dihedral_angle_4_deg 13.234 r_dihedral_angle_3_deg 12.972 r_dihedral_angle_1_deg 4.307 r_scangle_it 1.018 r_angle_refined_deg 0.95 r_scbond_it 0.603 r_mcangle_it 0.564 r_mcbond_it 0.313 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.19 r_nbd_refined 0.188 r_symmetry_hbond_refined 0.184 r_xyhbond_nbd_refined 0.102 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14447 Nucleic Acid Atoms Solvent Atoms 796 Heterogen Atoms 56
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement