☰ Navigation Tabs
Crystal structure of Anabaena sp. DyP-type peroxidese (AnaPX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4G2C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.89 57.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.734 α = 90 b = 132.601 β = 90 c = 176.528 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2011-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 90.5 0.06882 17.62 3.9 207238
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 81.2 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4G2C 1.89 34.73 172799 9114 91.81 0.1817 0.1808 0.1903 0.1993 0.2079 RANDOM 29.286
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.74 1.17 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.475 r_dihedral_angle_4_deg 19.997 r_dihedral_angle_3_deg 12.612 r_dihedral_angle_1_deg 5.886 r_mcangle_it 1.554 r_angle_refined_deg 1.453 r_angle_other_deg 1.254 r_mcbond_it 0.99 r_mcbond_other 0.99 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.475 r_dihedral_angle_4_deg 19.997 r_dihedral_angle_3_deg 12.612 r_dihedral_angle_1_deg 5.886 r_mcangle_it 1.554 r_angle_refined_deg 1.453 r_angle_other_deg 1.254 r_mcbond_it 0.99 r_mcbond_other 0.99 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_gen_planes_other 0.009 r_bond_other_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14941 Nucleic Acid Atoms Solvent Atoms 956 Heterogen Atoms 214
Software Software Software Name Purpose HKL-2000 data collection HKL-2000 data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction