5C0C

1E6 TCR in complex with HLA-A02 carrying RQFGPDWIVA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2910.1M HEPES pH7, 15% PEG 4000, 0.2M sodium acetate
Crystal Properties
Matthews coefficientSolvent content
2.7555.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.92α = 96.9
b = 100.37β = 98.02
c = 122.73γ = 96.07
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2012-03-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.97630DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.97120.38497.40.0480.060.048.32139923139923
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.972.03960.3240.3240.382.2210178

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3UTP and 3UTQ1.974120.38132894702997.420.19040.18850.2273RANDOM52.279
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.97-0.18-0.040.080.04-1.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.774
r_dihedral_angle_4_deg20.557
r_dihedral_angle_3_deg18.974
r_dihedral_angle_1_deg7.645
r_mcangle_it2.825
r_angle_refined_deg2.04
r_mcbond_it1.871
r_mcbond_other1.871
r_angle_other_deg1.334
r_chiral_restr0.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.774
r_dihedral_angle_4_deg20.557
r_dihedral_angle_3_deg18.974
r_dihedral_angle_1_deg7.645
r_mcangle_it2.825
r_angle_refined_deg2.04
r_mcbond_it1.871
r_mcbond_other1.871
r_angle_other_deg1.334
r_chiral_restr0.16
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_bond_other_d0.006
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13473
Nucleic Acid Atoms
Solvent Atoms569
Heterogen Atoms193

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction