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1E6 TCR in Complex with HLA-A0e carrying RQWGPDPAAV
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UTP 3UTP and 3UTQ experimental model PDB 3UTQ 3UTP and 3UTQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.2M sodium cholride, 0.1M MES pH6, 20% PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.75 55.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.8 α = 96.33 b = 99.26 β = 98.07 c = 122.15 γ = 96.42
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.332 48.913 97.4 0.041 0.075 0.05 12.7 2.2 83315 83315
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.33 2.39 96.5 0.291 0.291 0.418 2.6 2.2 6097
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UTP and 3UTQ 2.332 48.91 79156 4159 97.36 0.2095 0.2061 0.2061 0.2718 0.2718 RANDOM 55.312
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.03 0.19 -0.19 0.24 1.68 -2.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.399 r_dihedral_angle_4_deg 23.173 r_dihedral_angle_3_deg 22.659 r_dihedral_angle_1_deg 8.031 r_mcangle_it 2.119 r_scbond_it 1.981 r_angle_refined_deg 1.908 r_mcbond_it 1.29 r_chiral_restr 0.146 r_bond_refined_d 0.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.399 r_dihedral_angle_4_deg 23.173 r_dihedral_angle_3_deg 22.659 r_dihedral_angle_1_deg 8.031 r_mcangle_it 2.119 r_scbond_it 1.981 r_angle_refined_deg 1.908 r_mcbond_it 1.29 r_chiral_restr 0.146 r_bond_refined_d 0.015 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13254 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 153
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction