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1E6 TCR in complex with HLA-A02 carrying YQFGPDFPIA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UTP 3UTP and 3UTQ experimental model PDB 3UTQ 3UTP and 3UTQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.2M sodium cholride, 0.1M HEPES pH7, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.73 54.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.7 α = 96.95 b = 100.47 β = 98.11 c = 122.1 γ = 96.61
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.108 49.413 97 0.049 0.069 0.046 11.7 2.2 113252 113252
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 2.16 95.9 0.358 0.358 0.349 2.2 2.2 8304
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UTP and 3UTQ 2.11 49.41 107577 5674 97.04 0.1932 0.1909 0.1972 0.237 0.2408 RANDOM 50.562
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.74 -0.18 0.12 0.69 1 -2.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.793 r_dihedral_angle_4_deg 19.323 r_dihedral_angle_3_deg 18.567 r_dihedral_angle_1_deg 8.501 r_mcangle_it 2.62 r_angle_refined_deg 1.917 r_mcbond_it 1.636 r_mcbond_other 1.636 r_angle_other_deg 0.957 r_chiral_restr 0.127
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.793 r_dihedral_angle_4_deg 19.323 r_dihedral_angle_3_deg 18.567 r_dihedral_angle_1_deg 8.501 r_mcangle_it 2.62 r_angle_refined_deg 1.917 r_mcbond_it 1.636 r_mcbond_other 1.636 r_angle_other_deg 0.957 r_chiral_restr 0.127 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13450 Nucleic Acid Atoms Solvent Atoms 550 Heterogen Atoms 108
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction