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Crystal Structure of kinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 18-22% PEG 4000, 0.1 M Tris, pH 8.5, 200 mM CaCl2
Crystal Properties Matthews coefficient Solvent content 2.01 38.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.34 α = 90 b = 48.17 β = 93.28 c = 114.21 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 CCD ARRAY 2010-08-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.000 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 44.373 99.6 0.099 0.116 0.06 8.9 3.6 33558 33558
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.27 98.8 0.411 0.411 0.264 1.8 3.2 4812
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 30 31792 1711 99.42 0.1969 0.1946 0.1999 0.2403 0.2443 RANDOM 29.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.18 -0.32 -0.33 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.252 r_dihedral_angle_3_deg 16.842 r_dihedral_angle_4_deg 16.835 r_dihedral_angle_1_deg 5.976 r_mcangle_it 2.627 r_mcbond_it 1.513 r_mcbond_other 1.513 r_angle_refined_deg 1.338 r_angle_other_deg 0.953 r_chiral_restr 0.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.252 r_dihedral_angle_3_deg 16.842 r_dihedral_angle_4_deg 16.835 r_dihedral_angle_1_deg 5.976 r_mcangle_it 2.627 r_mcbond_it 1.513 r_mcbond_other 1.513 r_angle_refined_deg 1.338 r_angle_other_deg 0.953 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4112 Nucleic Acid Atoms Solvent Atoms 245 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction PHASER phasing MOSFLM data reduction