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Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 PEG MME 5000, MES, (NH4)2SO4
Crystal Properties Matthews coefficient Solvent content 2.16 43.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.859 α = 90 b = 81.913 β = 118.39 c = 32.469 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.23 81.913 96.4 0.066 11 3.3 39606
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.23 1.234 86.7 0.358 2.7 365
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.23 40.96 37322 2022 96.39 0.1797 0.1788 0.179 0.1956 0.1972 RANDOM 13.429
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.17 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.597 r_dihedral_angle_4_deg 17.235 r_dihedral_angle_3_deg 11.077 r_dihedral_angle_1_deg 7.046 r_scangle_it 3.338 r_scbond_it 2.112 r_mcangle_it 1.409 r_angle_refined_deg 1.35 r_mcbond_it 0.76 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.597 r_dihedral_angle_4_deg 17.235 r_dihedral_angle_3_deg 11.077 r_dihedral_angle_1_deg 7.046 r_scangle_it 3.338 r_scbond_it 2.112 r_mcangle_it 1.409 r_angle_refined_deg 1.35 r_mcbond_it 0.76 r_chiral_restr 0.092 r_bond_refined_d 0.01 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1171 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 39
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction