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Crystal structure of a putative epoxide hydrolase (KPN_01808) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 1.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M bicine pH 9, 30% polyethylene glycol 6000
Crystal Properties Matthews coefficient Solvent content 2.2 43.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.199 α = 101 b = 81.866 β = 106.9 c = 89.925 γ = 100.84
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Vertical focusing mirror; double crystal Si(111) monochromator 2015-03-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 0.97907 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 42.848 96.8 0.078 0.091 11.66 3.916 146333 -3 15.778
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 95.2 0.655 0.758 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 42.848 146328 7372 96.94 0.1498 0.1485 0.1605 0.1739 0.1821 RANDOM 17.638
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 -0.49 -0.51 0.22 0.04 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.868 r_dihedral_angle_4_deg 16.128 r_dihedral_angle_3_deg 10.562 r_dihedral_angle_1_deg 6.056 r_angle_other_deg 1.91 r_angle_refined_deg 1.785 r_mcangle_it 1.397 r_mcbond_it 0.882 r_mcbond_other 0.881 r_chiral_restr 0.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.868 r_dihedral_angle_4_deg 16.128 r_dihedral_angle_3_deg 10.562 r_dihedral_angle_1_deg 6.056 r_angle_other_deg 1.91 r_angle_refined_deg 1.785 r_mcangle_it 1.397 r_mcbond_it 0.882 r_mcbond_other 0.881 r_chiral_restr 0.109 r_bond_refined_d 0.019 r_gen_planes_refined 0.014 r_bond_other_d 0.013 r_gen_planes_other 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9395 Nucleic Acid Atoms Solvent Atoms 1880 Heterogen Atoms
Software Software Software Name Purpose PDB_EXTRACT data extraction SHELX phasing SHARP phasing XDS data reduction XSCALE data scaling REFMAC refinement SHELXD phasing