☰ Navigation Tabs
Crystal structure of a carbohydrate esterase family 3 from Talaromyces cellulolyticus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 170mM ammonium sulfate, 28% PEG 4000, 5% glycerol, 0.5% n-octyl-beta-D-glucoside
Crystal Properties Matthews coefficient Solvent content 2.43 49.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.905 α = 90 b = 70.905 β = 90 c = 87.093 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2014-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99 2.3 6.9 35924
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.5 30 34097 1789 99.11 0.14788 0.14486 0.1462 0.20305 0.2047 RANDOM 22.296
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.15 -0.31
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.742 r_dihedral_angle_2_deg 37.758 r_sphericity_bonded 13.607 r_dihedral_angle_4_deg 12.233 r_dihedral_angle_3_deg 11.721 r_dihedral_angle_1_deg 6.406 r_long_range_B_refined 5.615 r_long_range_B_other 5.586 r_scangle_other 5.325 r_scbond_it 4.993
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.742 r_dihedral_angle_2_deg 37.758 r_sphericity_bonded 13.607 r_dihedral_angle_4_deg 12.233 r_dihedral_angle_3_deg 11.721 r_dihedral_angle_1_deg 6.406 r_long_range_B_refined 5.615 r_long_range_B_other 5.586 r_scangle_other 5.325 r_scbond_it 4.993 r_scbond_other 4.924 r_rigid_bond_restr 4.087 r_mcangle_it 3.253 r_mcangle_other 3.253 r_mcbond_other 2.858 r_mcbond_it 2.855 r_angle_refined_deg 2.096 r_angle_other_deg 1.543 r_chiral_restr 0.147 r_bond_refined_d 0.023 r_gen_planes_refined 0.012 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1578 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing