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Cooperative bio-metallic selectivity in a tailored protease enables creation of a C-C cross-coupling Heckase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GCI PDB ENTRY 1GCI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 33% PEG 3350, 100 MM AMMONIUM SULFATE, 0.1 M TRIS PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.2 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.059 α = 90 b = 61.28 β = 90 c = 74.66 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 PIXEL DECTRIS PILATUS 2014-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 47.37 99.9 0.08 13.4 5 35362 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.58 100 0.5 3.3 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GCI 1.55 47.37 33500 1805 99.79 0.13594 0.13492 0.1483 0.15442 0.1687 RANDOM 13.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.8 -1.01 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.236 r_dihedral_angle_4_deg 13.51 r_dihedral_angle_3_deg 11.159 r_dihedral_angle_1_deg 5.823 r_angle_refined_deg 1.768 r_scbond_it 1.742 r_mcangle_it 1.609 r_mcbond_it 1.084 r_angle_other_deg 1.06 r_mcbond_other 1.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.236 r_dihedral_angle_4_deg 13.51 r_dihedral_angle_3_deg 11.159 r_dihedral_angle_1_deg 5.823 r_angle_refined_deg 1.768 r_scbond_it 1.742 r_mcangle_it 1.609 r_mcbond_it 1.084 r_angle_other_deg 1.06 r_mcbond_other 1.056 r_chiral_restr 0.115 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1878 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling