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Actinobacillus actinomycetemcomitans OMP100 residues 133-198 fused to GCN4 adaptors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WPQ PDB ENTRY 2WPQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1 M TRI-SODIUM CITRATE PH 5.5, 2 %(V/V) DIOXANE 15 %(W/V) PEG 10,000
Crystal Properties Matthews coefficient Solvent content 2.5 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.13 α = 90 b = 35.86 β = 96.02 c = 198.51 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 32.9 92.4 0.04 14 2.84 18247 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.44 86.5 0.45 1.88 2.52
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WPQ 2.3 32.9 17278 956 92.24 0.22628 0.22478 0.2558 0.25407 0.2903 RANDOM 57.347
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 27.89 -1.57 18.44 -46.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.03 r_dihedral_angle_3_deg 19.997 r_dihedral_angle_4_deg 18.199 r_dihedral_angle_1_deg 5.573 r_mcangle_it 2.649 r_scbond_it 1.812 r_mcbond_it 1.761 r_mcbond_other 1.756 r_angle_refined_deg 1.061 r_angle_other_deg 0.743
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.03 r_dihedral_angle_3_deg 19.997 r_dihedral_angle_4_deg 18.199 r_dihedral_angle_1_deg 5.573 r_mcangle_it 2.649 r_scbond_it 1.812 r_mcbond_it 1.761 r_mcbond_other 1.756 r_angle_refined_deg 1.061 r_angle_other_deg 0.743 r_chiral_restr 0.057 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2935 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing