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Crystal structure of CDK2 in complex with 6-methoxy-7H-purine processed with the CrystalDirect automated mounting and cryo-cooling technology
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.02 M HEPES, PH=7.0, 5% GLYCEROL, 12% PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.99 38.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.636 α = 90 b = 71.32 β = 90 c = 72.047 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.73 99.8 0.12 2.3 7.3 30471 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.7 30 28887 1536 99.7 0.20666 0.20431 0.25178 0.2382 RANDOM 22.965
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.81 0.05 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.663 r_dihedral_angle_3_deg 14.945 r_dihedral_angle_4_deg 14.003 r_dihedral_angle_1_deg 6.36 r_scbond_it 3.528 r_mcangle_it 3.401 r_mcbond_it 2.279 r_mcbond_other 2.273 r_angle_refined_deg 1.962 r_angle_other_deg 0.986
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.663 r_dihedral_angle_3_deg 14.945 r_dihedral_angle_4_deg 14.003 r_dihedral_angle_1_deg 6.36 r_scbond_it 3.528 r_mcangle_it 3.401 r_mcbond_it 2.279 r_mcbond_other 2.273 r_angle_refined_deg 1.962 r_angle_other_deg 0.986 r_chiral_restr 0.122 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2366 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement