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Nitrosyl complex of the D121Q variant of cytochrome c prime from Alcaligenes xylosoxidans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 AMMONIUM SULFATE, HEPES, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.64 53.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.239 α = 90 b = 53.239 β = 90 c = 180.539 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2013-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.09 15.5 97 0.07 15.4 5.8 62452
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.09 1.13 76 0.73 1.2 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.09 46.11 59145 3155 96.94 0.17029 0.1695 0.1807 0.18521 0.1995 RANDOM 16.48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 -0.2 -0.39 1.28
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 70.497 r_dihedral_angle_2_deg 34.038 r_dihedral_angle_4_deg 20.558 r_sphericity_bonded 15.874 r_dihedral_angle_3_deg 13.895 r_dihedral_angle_1_deg 5.839 r_mcangle_it 4.815 r_rigid_bond_restr 4.289 r_mcbond_it 3.626 r_mcbond_other 3.626
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 70.497 r_dihedral_angle_2_deg 34.038 r_dihedral_angle_4_deg 20.558 r_sphericity_bonded 15.874 r_dihedral_angle_3_deg 13.895 r_dihedral_angle_1_deg 5.839 r_mcangle_it 4.815 r_rigid_bond_restr 4.289 r_mcbond_it 3.626 r_mcbond_other 3.626 r_angle_refined_deg 2.27 r_scbond_it 2.259 r_angle_other_deg 1.801 r_chiral_restr 0.105 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_gen_planes_other 0.008 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 941 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling