5A8Z

Crystal Structure of human neutrophil elastase in complex with a dihydropyrimidone inhibitor


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.3247.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.119α = 90
b = 73.119β = 90
c = 70.162γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMIRRORSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.930.6995.50.16.48.7116452

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUTNONE263.371358072098.650.192240.189930.23644RANDOM22.703
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.410.210.41-0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.604
r_dihedral_angle_4_deg16.759
r_dihedral_angle_3_deg14.748
r_dihedral_angle_1_deg6.759
r_scangle_it3.167
r_scbond_it2.036
r_angle_refined_deg1.502
r_mcangle_it1.398
r_mcbond_it0.861
r_nbtor_refined0.308
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.604
r_dihedral_angle_4_deg16.759
r_dihedral_angle_3_deg14.748
r_dihedral_angle_1_deg6.759
r_scangle_it3.167
r_scbond_it2.036
r_angle_refined_deg1.502
r_mcangle_it1.398
r_mcbond_it0.861
r_nbtor_refined0.308
r_nbd_refined0.203
r_symmetry_vdw_refined0.162
r_xyhbond_nbd_refined0.13
r_symmetry_hbond_refined0.113
r_chiral_restr0.096
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1606
Nucleic Acid Atoms
Solvent Atoms91
Heterogen Atoms93

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling