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Structure of the 26S proteasome-Ubp6 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4C43 experimental model PDB 1VJV
Sample 26S PROTEASOME FROM SACCHAROMYCES CEREVISIAE IN THE PRESENCE OF SACCHAROMYCES CEREVISIAE UBP6 AND UBIQUITIN ALDEHYDE
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details VITRIFICATION 1 -- CRYOGEN- ETHANE, INSTRUMENT- HOMEMADE PLUNGER,
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 53000 Reported Resolution (Å) 9.5 Resolution Method FSC Other Details SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-3034. (DEPOSITION ID: 13439). Refinement Type HALF-MAPS REFINED INDEPENDENTLY Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (4C43, 1VJV) Refinement Space REAL Refinement Protocol OTHER Refinement Target Cross-correlation coefficient Overall B Value Fitting Procedure Details METHOD--LOCAL CORRELATION
Data Acquisition Detector Type FEI FALCON II (4k x 4k) Electron Dose (electrons/Å**2) 45
Imaging Experiment 1 Date of Experiment 2014-12-12 Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 3500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version RECONSTRUCTION Xmipp
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details MICROGRAPH