5A4H
Solution structure of the lipid droplet anchoring peptide of CGI-58 bound to DPC micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | HNCA | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 310.0 | ||
2 | HNCACB | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 310.0 | ||
3 | HNCACO | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 310.0 | ||
4 | HSQC | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 310.0 | ||
5 | HSQC_ANOESY | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 310.0 | ||
6 | NOESYHSQC | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 310.0 | ||
7 | HCCONH | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 310.0 | ||
8 | CCONH | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 310.0 | ||
9 | HCCH_TOCSY | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 310.0 | ||
10 | TOCSY_90MS | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 303.0 | ||
11 | 13CHSQC_B900 | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 310.0 | ||
12 | CNOESY_B900 | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 310.0 | ||
13 | NOESY_200MS | 93% H2O/7% D2O | 70.0 | 6.0 | 1.0 atm | 303.0 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DD2 | 600 |
2 | Varian | 700 | |
3 | Bruker | 750 | |
4 | Varian | 500 | |
5 | Bruker | 900 | |
6 | Bruker | 900 | |
7 | Bruker | 900 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | LOWEST ENERGY |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (n/a) |
Additional NMR Experimental Information | |
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Details | THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON THE DOUBLY LABELED PEPTIDE BOUND TO DPC MICELLES. HOMONOCULEAR NOESY AND TOCSY EXPERIMENTS ON A SHORTER UNLABELED PEPTIDE ALSO BOUND TO DPC MICELLES AND PARAMAGNETIC RELAXATION EXPERIMENTS TO ORIENT THE PEPTIDE WITH RESPECT TO THE MICELLE. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | GUNTERT | |
2 | structure solution | NMRDraw | ANY | |
3 | structure solution | NMRPipe | ANY | |
4 | structure solution | CcpNmr Analysis | 2.4 | |
5 | structure solution | TALOS | 1 |