X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.529123% PEG 3350, 0.2 M Calcium chloride, 0.1 M Bis Tris propane pH 5.5 Additive: 2% 1,6-Hexanediol Ratio (protein/precipitant/additive): 0.5/2/0.3 with streak seeding starting from spherulites.
Crystal Properties
Matthews coefficientSolvent content
2.5451.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 84.17α = 90
b = 110.359β = 90.63
c = 118.522γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2013-02-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.979235ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.43118.5299.40.130.0858.66.3811161137.24
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.432.4899.30.82.26.55568

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1DYO and 2w5f2.43118.5277022407299.280.228790.226870.26495RANDOM48.706
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.12-1.17-2.432.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.587
r_dihedral_angle_4_deg18.023
r_dihedral_angle_3_deg14.507
r_long_range_B_refined8.415
r_long_range_B_other8.415
r_scangle_other6.359
r_dihedral_angle_1_deg5.985
r_mcangle_it5.407
r_mcangle_other5.407
r_scbond_it4.104
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.587
r_dihedral_angle_4_deg18.023
r_dihedral_angle_3_deg14.507
r_long_range_B_refined8.415
r_long_range_B_other8.415
r_scangle_other6.359
r_dihedral_angle_1_deg5.985
r_mcangle_it5.407
r_mcangle_other5.407
r_scbond_it4.104
r_scbond_other4.103
r_mcbond_it3.564
r_mcbond_other3.563
r_angle_other_deg1.967
r_angle_refined_deg1.535
r_chiral_restr0.079
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_bond_other_d0.008
r_gen_planes_other0.007
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12488
Nucleic Acid Atoms
Solvent Atoms30
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing