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FerA - NADH:FMN oxidoreductase from Paracoccus denitrificans in complex with FMN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG 4000, ammonium sulfate, ammonium acetate, MES
Crystal Properties Matthews coefficient Solvent content 2.15 42.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.92 α = 90 b = 43.92 β = 90 c = 154.48 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2012-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.81 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 15 99 21.3915 4.19 16671
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 15 15793 834 98.7 0.168 0.166 0.1788 0.202 0.21 RANDOM 42.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.479 r_dihedral_angle_4_deg 16.544 r_dihedral_angle_3_deg 12.946 r_long_range_B_refined 10.474 r_long_range_B_other 10.471 r_dihedral_angle_1_deg 7.139 r_scangle_other 5.686 r_scbond_it 3.562 r_scbond_other 3.537 r_mcangle_it 3.027
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.479 r_dihedral_angle_4_deg 16.544 r_dihedral_angle_3_deg 12.946 r_long_range_B_refined 10.474 r_long_range_B_other 10.471 r_dihedral_angle_1_deg 7.139 r_scangle_other 5.686 r_scbond_it 3.562 r_scbond_other 3.537 r_mcangle_it 3.027 r_mcangle_other 3.026 r_angle_refined_deg 2.062 r_mcbond_it 2.05 r_mcbond_other 2.049 r_angle_other_deg 0.968 r_chiral_restr 0.126 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1201 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing