Experiment: 4WBR

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	293	0.1 M Na-citrate, 20% PEG 6000

Crystal Properties
Matthews coefficient	Solvent content
2.38	48.41

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 92.86	α = 90
b = 44.76	β = 90
c = 40	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	80	PIXEL	DECTRIS PILATUS 6M		2014-07-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	1	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	46	91.2	0.099	0.103	17.04	12		30788		-3	19.097

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.43	55.9		0.763	0.809	2.33

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	4txo	1.4	42	30788	1494	91.2	0.1283	0.126	0.1753	RANDOM	18.926

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.47			-0.27		-0.2

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	49.923
r_dihedral_angle_2_deg	33.436
r_dihedral_angle_4_deg	18.667
r_sphericity_bonded	14.632
r_dihedral_angle_3_deg	13.459
r_dihedral_angle_1_deg	5.793
r_rigid_bond_restr	5.405
r_mcangle_it	3.779
r_mcbond_it	3.729
r_mcbond_other	3.721

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	49.923
r_dihedral_angle_2_deg	33.436
r_dihedral_angle_4_deg	18.667
r_sphericity_bonded	14.632
r_dihedral_angle_3_deg	13.459
r_dihedral_angle_1_deg	5.793
r_rigid_bond_restr	5.405
r_mcangle_it	3.779
r_mcbond_it	3.729
r_mcbond_other	3.721
r_angle_refined_deg	2.012
r_angle_other_deg	0.989
r_chiral_restr	0.146
r_bond_refined_d	0.021
r_gen_planes_refined	0.012
r_gen_planes_other	0.004
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1225
Nucleic Acid Atoms
Solvent Atoms	235
Heterogen Atoms	1

Software

Software
Software Name	Purpose
XDS	data reduction
REFMAC	refinement
PDB_EXTRACT	data extraction
XSCALE	data scaling
PHASER	phasing
XSCALE	data reduction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.