4WBK

The 1.37 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with stearic acid


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP82930.1M Tris-HCl, 38% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.1743.21

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.645α = 90
b = 68.807β = 90
c = 33.62γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152012-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL38B10.9SPring-8BL38B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.375097.70.088.16.526772
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.371.3979.40.4691.93.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.3742.7925382134697.720.154360.153220.17587RANDOM12.83
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.181.10.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.869
r_dihedral_angle_4_deg15.887
r_dihedral_angle_3_deg14.251
r_dihedral_angle_1_deg6.504
r_long_range_B_refined5.499
r_long_range_B_other5.08
r_scangle_other3.852
r_scbond_it2.658
r_scbond_other2.656
r_angle_refined_deg2.107
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.869
r_dihedral_angle_4_deg15.887
r_dihedral_angle_3_deg14.251
r_dihedral_angle_1_deg6.504
r_long_range_B_refined5.499
r_long_range_B_other5.08
r_scangle_other3.852
r_scbond_it2.658
r_scbond_other2.656
r_angle_refined_deg2.107
r_mcangle_it1.776
r_mcangle_other1.774
r_mcbond_it1.186
r_mcbond_other1.177
r_angle_other_deg0.879
r_chiral_restr0.12
r_bond_refined_d0.023
r_gen_planes_refined0.012
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1044
Nucleic Acid Atoms
Solvent Atoms191
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement