4WA0

The structure of a possible adhesin C-terminal domain from Caldicellulosiruptor kronotskyensis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP3.4294PEG ion HT screen from Hampton Research (Aliso Viejo, CA) condition G12 containing 0.07 M Citric acid, 0.03 M BIS-TRIS propane, and 16% (w/v) Polyethylene glycol 3350
Crystal Properties
Matthews coefficientSolvent content
2.3447.35

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.507α = 90
b = 75.29β = 90
c = 77.446γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBruker Platinum 1352014-07-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75599.817.488.244024414.323
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.898.82.365.69

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.753.9838105196899.530.15220.150.1941RANDOM20.199
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.02-0.010.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.246
r_dihedral_angle_4_deg18.655
r_dihedral_angle_3_deg13.215
r_long_range_B_refined7.081
r_dihedral_angle_1_deg6.964
r_long_range_B_other6.608
r_scangle_other4.244
r_mcangle_other2.883
r_mcangle_it2.881
r_scbond_it2.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.246
r_dihedral_angle_4_deg18.655
r_dihedral_angle_3_deg13.215
r_long_range_B_refined7.081
r_dihedral_angle_1_deg6.964
r_long_range_B_other6.608
r_scangle_other4.244
r_mcangle_other2.883
r_mcangle_it2.881
r_scbond_it2.86
r_scbond_other2.86
r_mcbond_it1.989
r_mcbond_other1.983
r_angle_refined_deg1.969
r_angle_other_deg0.928
r_chiral_restr0.122
r_bond_refined_d0.019
r_gen_planes_refined0.011
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2678
Nucleic Acid Atoms
Solvent Atoms549
Heterogen Atoms1

Software

Software
Software NamePurpose
PROTEUM PLUSdata scaling
Cootmodel building
REFMACrefinement